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Assembly v1.0 (January 2011) is a draft assembly of 454 gDNA reads and shredded Velvet contigs. The latter were assembled from Solexa gDNA reads. A total of 39 scaffolds and 31.9 Mbp were assembled using Newbler.
Summary statistics for the Xanthoria parietina v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 31.90 |
| Sequencing read coverage depth | 43.84x |
| # of contigs | 302 |
| # of scaffolds | 39 |
| # of scaffolds >= 2Kbp | 39 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 1.73 |
| # of gaps | 263 |
| % of scaffold length in gaps | 0.3% |
| Three largest Scaffolds (Mbp) | 3.93, 2.80, 2.31 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1505 | 1212 |
| transcript | 1296 | 1047 |
| exon | 435 | 238 |
| intron | 108 | 60 |
| description: | ||
| protein length (aa) | 432 | 349 |
| exons per gene | 2.98 | 2 |
| # of gene models | 10818 |
Collaborators
- Paul Dyer at U of Nottingham.
- Peter Crittenden at U of Nottingham.
- David Archer at U of Nottingham.
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
